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Publications of the ESBIC-D project



  • Wierling, C. and Herwig, H. (2006) Systems biology and drug discovery - A new path in genome research. Screening - Trends in drug discovery, 7(3):39-41.

  • Klipp, E., Herwig, R., Kowald, A., Wierling, C., and Lehrach H. (2005) Systems Biology in Practice: Concepts, Implementation and Application. Wiley-VCH, Weinheim.

  • Wierling, C. and Herwig, H. (2006) Systems biology and drug discovery - A new path in genome research. Screening - Trends in drug discovery, 7(3):39-41.

  • Award: Wierling, C. (2006) PyBioS – a modelling and simulation tool for biological processes. In Contributions to the Heinz Billing Price for Scientific Computation of the Max Planck Society 2005 (eds V. Macho und K. Kremer), in press. Gesellschaft für wissenschaftliche Datenverarbeitung Göttingen (GWDG).

  • Herwig, R., and Lehrach, H. (2006) Expression profiling of drug response - from genes to pathways. Dialogues in Clinical Neuroscience, in press.

  • Assmus, H., Herwig, R., Cho, K.H., and Wolkenhauer O. Understanding the dynamics of biological systems: roles in medical research. Expert Reviews in Molecular Diagnostics, 6(6):891-902.

  • Hache, H., Wierling, C., Lehrach, H., Herwig, R. Reconstruction and Validation of Gene Regulatory Networks with Neural Networks. Proceedings of the 2nd Foundations of Systems Biology in Engineering Conference (FOSBE), Stuttgart, Germany, 319-324.

  • Wierling, C., Herwig, R., and Lehrach, H. Resources, Standards and Tools for Systems Biology. Briefings in Functional Genomics and Proteomics, doi:10.1093/bfgp/elm027.

  • D. Arlt, W. Huber, U. Liebel, C. Schmidt, M. Majety, M. Sauermann, H. Rosenfelder, S. Bechtel, A. Mehrle, D. Bannasch, I. Schupp, M. Seiler, J. Simpson, F. Hahne, P. Moosmayer, M. Ruschhaupt, B. Guilleaume, R. Wellenreuther, R. Pepperkok, H. Sültmann, A. Poustka, S. Wiemann. Functional Profiling: From Microarrays via Cell-Based Assays to Novel Tumor Relevant Modulators of the Cell Cycle. Cancer Res. 65(17), 7733-7742, 2005

  • J. Schneider, M. Ruschhaupt, A. Buneß, M. Asslaber, K. Zatloukal, A. Poustka, H. Sültmann. A minimal gene expression signature for the accurate diagnosis of estrogen receptor status in breast cancer. Int. J. Canc. 119(12), 2974-2979, 2006

  • Korf U, Kohl T, van der Zandt H, Zahn R, Schleeger S, Ueberle B, Wandschneider S, Bechtel S, Schnolzer M, Ottleben H, Wiemann S, Poustka A. A discovery tool for studying protein-protein interactions. Expert Rev Proteomics. (2005) 2(1):13-26

  • Korf U, Kohl T, van der Zandt H, Zahn R, Schleeger S, Ueberle B, Wandschneider S, Bechtel S, Schnolzer M, Ottleben H, Wiemann S, Poustka A. Large-scale protein expression for proteome research. Proteomics. (2005) 5(14):3571-80.

  • Guilleaume B, Buness A, Schmidt C, Klimek F, Moldenhauer G, Huber W, Arlt D, Korf U, Wiemann S, Poustka A. Systematic comparison of surface coatings for protein microarrays. Proteomics. (2005) 5(18):4705-12.

  • Rapaport, F., Zynoviev, A., Dutreix, M., Barillot, E., Vert, J.-P. (2006) Spectral analysis of gene expression profile using gene networks. Technical report HAL.

  • Clark T, Schweitzer A, Chen T, Staples M, Lu G, et al. Discovery of tissue-specific exons using comprehensive human exon microarrays. Genome Biology 8: R64.

  • Okoniewski MJ, Yates T, Dibben S, Miller CJ. An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data. Genome Biology 8: R79.

  • Pierce A, Unwin RD, Evans CA, Griffiths S, Carney L, et al. Eight-channel iTRAQ enables comparison of the activity of 6 leukaemogenic tyrosine kinases Molecular and Cellular proteomics, advanced access.

  • Rapaport F., Zinovyev A., Dutreix M., Barillot E. and Vert J.-P. (2006) Classification of microarray data with a gene network. BMC Bioinformatics, in revision.

  • Rapaport F., Zinovyev A., Dutreix M., Barillot E., Vert J.-P. Classification of microarray data using gene networks. 2007. BMC Bioinformatics 8:35.

  • Radulescu O., Zinovyev A., Lilienbaum A. Model reduction and model comparison for NFkB signalling. Proceedings of the 2nd Foundations of Systems Biology in Engineering Conference (FOSBE), Stuttgart, Germany.

  • Andrei Zinovyev, Eric Viara, Laurence Calzone, and Emmanuel Barillot. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. Bioinformatics, Advance Access published on November 16, 2007; doi: doi:10.1093/bioinformatics/btm553.

  • Stark K, Eder J, and Zatloukal K. Priority-Based k-Anonymity Accomplished by Weighted Generalisation Structures, LNCS (2006) 4081, 394 – 404.

  • Schneider J, Ruschhaupt M, Buneß A, Asslaber M, Regitnig P, Zatloukal K, Schippinger W, Ploner F, Poustka A, and Sültmann H. Identification and meta-analysis of a small gene expression signature for the diagnosis of estrogen receptor status in invasive ductal breast cancer Int. J. Cancer (2006) 119(12) 2974 – 2979.
Created by elisabeth
Last modified 2008-05-15 01:23 PM
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MPIMG Berlin
Elisabeth Maschke-Dutz
Christoph Wierling
Ralf Herwig